Questions tagged [multiple-sequence-alignment]

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Generating sequences from HMM

I encountered this question in a textbook (source: and was trying to workout the solution for it. Was ...
xxxcompbioxxx's user avatar
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Multiple Alignment cost application

Is there any biological application/case where someone would be interested in the estimated total cost of the alignment between a set of sequences (genes or amino acids) without the aligned sequence ...
gcorso's user avatar
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Sequence alignment with MUSCLE

For protein multiple sequence alignment (MSA), I am using MUSCLE (v5.1). The default setting without any specifications gives a 'bad' output even though my proteins are very similar (UniProt sequence ...
Balint Biro's user avatar