Questions tagged [nextflow]
The nextflow tag has no usage guidance.
4
questions with no upvoted or accepted answers
1
vote
0
answers
49
views
Problem with nextflow -resume and path.fromSRA
I have a problem with nextflow -resume
Here is my script :
...
- 21
1
vote
1
answer
78
views
Remove files after process is terminated
In my pipeline nextflow, I create a channel with channel.fromSRA and the channel contains lots of heavy files.fastq.gz. Then I have a first process to unzip files and transform them in files.fasta and ...
- 21
1
vote
0
answers
154
views
Passing around complex metadata in Nextflow
I have a number of samples (from the 1000 genomes) that I want to analyse using Nextflow. However, I need to keep track of their metadata, fields like sample ID, analysis type etc. So I have a basic ...
- 360
0
votes
0
answers
518
views
parse csv/text file to create a channel with array in nextflow
[![example csv file][1]][1]
First I want to start by parsing and doing some operation on a text/csv file. How could I read a csv/text file in nextflow?
Suppose, I have above csv file with 3 columns. ...
- 247