Questions tagged [nextflow]
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55
questions
1
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1
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Master of Pores Installation Mac OS Mojave 10.14
I'm bit of a newbie with ONT analyses and am having some trouble with the Master Of Pores installation instructions (https://biocorecrg.github.io/master_of_pores/install.html). I've managed to install ...
- 11
0
votes
1
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118
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nextflow `fromPath` not passing all files with *
main.nf is
#!/usr/bin/env nextflow
params.input = ''
tchan = Channel.fromFile(params.input)
tchan.println()
I have a.bam, b.bam and c.bam
I run:
...
- 585
1
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0
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154
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Passing around complex metadata in Nextflow
I have a number of samples (from the 1000 genomes) that I want to analyse using Nextflow. However, I need to keep track of their metadata, fields like sample ID, analysis type etc. So I have a basic ...
- 360
4
votes
2
answers
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Run Nextflow with file dependencies inside a Docker container?
I’m trying to run a Nextflow workflow in a custom Docker container. Without Docker, the workflow succeeds. But running it inside the container leads to an error because a dependent file cannot be ...
- 4,815
3
votes
2
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Autodetect max number of cores and pass as an argument in Nextflow
I am creating a pipeline in Nextflow. One step is creating a pangenome with Roary. Roary takes threads as an argument and if no number of threads is supplied as an argument it defaults to one.
Is ...
- 439