Questions tagged [nextflow]
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Master of Pores Installation Mac OS Mojave 10.14
I'm bit of a newbie with ONT analyses and am having some trouble with the Master Of Pores installation instructions (https://biocorecrg.github.io/master_of_pores/install.html). I've managed to install ...
nextflow `fromPath` not passing all files with *
main.nf is #!/usr/bin/env nextflow params.input = '' tchan = Channel.fromFile(params.input) tchan.println() I have a.bam, b.bam and c.bam I run: ...
Passing around complex metadata in Nextflow
I have a number of samples (from the 1000 genomes) that I want to analyse using Nextflow. However, I need to keep track of their metadata, fields like sample ID, analysis type etc. So I have a basic ...
Run Nextflow with file dependencies inside a Docker container?
I’m trying to run a Nextflow workflow in a custom Docker container. Without Docker, the workflow succeeds. But running it inside the container leads to an error because a dependent file cannot be ...
Autodetect max number of cores and pass as an argument in Nextflow
I am creating a pipeline in Nextflow. One step is creating a pangenome with Roary. Roary takes threads as an argument and if no number of threads is supplied as an argument it defaults to one. Is ...