Questions tagged [non-coding]
This refers to parts of or whole transcripts (or occasionally genes) that are not translated into proteins.
Target genes for piRNA
Where I can find a database or tool to give me the target genes of PIWI (piRNAs) in human? I found one but works for worm like <...
using Bowtie to map miRNA-seq data to rfam and also reference genome
I am using Bowtie to remove non-coding RNAs (tRNA, snRNA, rRNA) by rfam and also maping our microRNA-seq data with mirbase using following code: ...
Is is possible to predict ncRNAs from sequence and homology alone?
I'm working with a set of homologous genes (let's call it gene A) from several bacterial species. I know (from previously published research) that in gene B (a close paralogue of gene A), there is a ...
Are there databases to annotate non-coding mutations?
I would like to ask if there are some known databases that allows to annotate non-coding mutations in a given region for the human genome? Preferably, if the database is downloadable so I am able to ...
Which tools are available to call somatic mutations on non-coding regions from whole genome sequencing data?
I have a set of whole genome sequencing samples, some of which have matched normal while some not. I want to call somatic mutations on non-coding regions. I was looking for GATK best practices (like ...