Questions tagged [paf]
The paf tag has no usage guidance.
3
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Extracting positions from PAF files in order to extract sequences from a Fastq file with Python
I have used Minimap2 to create a paf file by aligning a Fastq file against itself. Now from this Paf file I can see where the reads overlap, and I want to take these positions, and use them to extract ...
2
votes
1
answer
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Understanding PAF format
Does anyone have any experience with PAF files (minimap2 output)? I don’t fully understand what my output means.
I’ve looked at the minimap2 explanation (https://github.com/lh3/miniasm/blob/master/PAF....
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2
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answer
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Filtering file with AWK and writing output to new file
Hi I'm trying to filter a column in a PAF file with the AWK command and write it to a new file:
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