Questions tagged [parameters]

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Producing just network files from BiG-SCAPE

I was wondering if anyone knows off-hand if there is a way to run BiG-SCAPE without producing the svg or html files? All I want is the networking files (which I can play with in CytoScape). There isn'...
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1 vote
2 answers
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Parameter optimisation of minimap2

I'm leveraging minimap2 to map select genes from short-read microbial fastq metagenomics zip files. ...
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Remote NCBI's Blast Perl API: maximising hits returned via command line

Question and Background I'm using NCBI's Blast Perl API to interrogate Genbank for example blastp. I don't get the throughput using their point and click web stuff. ...
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