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Questions tagged [pbwt]

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Is it valid VCF not to 'squash' positions with more than one ALT allele?

I'm seeing output from PBWT that looks like this: ...
Dan Bolser's user avatar
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2 answers

Confusing result from Sanger Imputation Service (Eagle v2.4 for phasing, PBWT v3.1 for imputation)

I ran my 23andMe data through the Sanger Imputation Service that uses Eagle v2.4 for phasing, PBWT v3.1 for imputation. However, some aspects of the results are very confusing to me. Perhaps see #3 (...
Dan Bolser's user avatar