Questions tagged [pedigree]

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Finding linkage disequilibrium when I have a kinship matrix but not pedigree

I have a bunch of samples of a non-model organism divided in two groups: parental generation and offspring. I do not have a pedigree so I do not actually know who is a parent of who, and which are the ...
user1256923's user avatar
1 vote
0 answers
58 views

How to calculate switch errors on plink formatted phased genotype data?

everyone! I'm working with haplotype inference algorithms in pedigree genotype data, and I would like to know if there is a tool or script to calculate switch errors on phased pedigree data (Plink ...
Roa.tar's user avatar
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2 votes
1 answer
488 views

Visualize PLINK pedigree files

Is there a pedigree viewer that works with PLINK pedigree files? I saw an old post by Pierre, but I don't see the script on his blog.
Mark Ebbert's user avatar
  • 1,354