Questions tagged [perl]
Generally refers to Perl5 and is a much loved computer language of exceptional beauty and simplicity. It is the hallmark of exceptional character.
9
questions with no upvoted or accepted answers
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Finding common and unique data set by comparing two files based on their column and to split the columns multiple strings to print in output
I have very large sizes tab-delimited .vcf files and want to match these two / or 3 files based on their position and print to a new .csv file
File structures:
File_1: tab-delimited file (.vcf) ...
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3
votes
1
answer
333
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"perl: warning: Setting locale failed." in RepeatMasker
I'm trying to run Repeatmasker in Linux on the command line with:
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Trying to show the gaps of each seq on bio::Graphics after converting clustalw
I want a box representing each sequence, positioned as they are in the alignment and with gaps shown as breaks in the each box.
I've been having trouble for a while with this and have been trying to ...
2
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0
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Finding bioperl on cpanmetadb failed
I failed to install bioperl on debian in the following way:
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How to interprete PlasmidSeeker results concerning plasmids?
I've been interested in plasmid detection in bacterial genomes. I tried plasmidfinder and this software found only one plasmid in each of my two bacterial genomes. I was dubious about these results, ...
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2
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Error "Can't locate List/MoreUtils.pm in @INC" when I run update_blastdb.pl
I encoutered some technical problem when learning BLAST as below:
After I use conda install blast to install ncbi-blast, and run the command:
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309
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tmhmm installation and running
I am trying to predict transmembrane protein using tmhmm-2.0c. According to Package instruction, I have changed the path of perl inside the program like as ...
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Old program make error ProtDeform
Im trying to run ProtDeform on ubuntu 20.04
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125161/
I need scoring function :/ to my project
But error occurs:
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What tool(s) can I use to use a .faa file to feed into JSMol?
JSMol, the molecular modelling software, requires PDB file format to work and render the graphics. Currently, I am writing an annotation software - backend in Perl - that takes in a .faa file (fasta ...
