Questions tagged [population-genetics]
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Predict population based on PC coordinates
Utilizing a reference panel, I want to assign most likely population label to each individual in the study. Following are the files I have:
Reference panel population labels:
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How to open .weir.fst files witout losing data?
I have .vcf file with over 78 000 variations in 95 experiment subjects. I used vcftools to extract fixation index score for general differentiation between Case and Control groups.
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Is there any book or reference that explains evolutionary dynamics and fixation probability?
I am a master's student in computational and mathematical biology, with a bachelor's degree in pure mathematics.
I am really struggling with my computational biology course, we are supposed to study ...
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How to compute Shanon entropy
I want to analyze some viral sequences. I want to use shanon entropy as a measure to analyze the sequences. However I do not understand the concept of shannon entropy. Would anyone explain please how ...
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How to interpret Mendelian randomization results?
I did Mendelian randomization using this software:
https://cran.r-project.org/web/packages/MendelianRandomization/vignettes/Vignette_MR.pdf
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anamaria