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Questions tagged [ragtag]

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RagTag patch error--"Tuple index out of range"

This question was also asked on GitHub I'm trying to correct a long-read assembly with a short-read scaffold; I'm hoping to fill in the short gaps in the scaffold with the matching long-read sections. ...
schmiggle's user avatar
4 votes
4 answers

How to rename a file based on a directory name?

I have a lot of FASTA files that I recently scaffolded with RagTag. The output of RagTag includes a directory for each sample and the corresponding FASTA file written as "ragtag.scaffold.fasta&...
rimo's user avatar
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