Questions tagged [repeatmasker]
The repeatmasker tag has no usage guidance.
5
questions with no upvoted or accepted answers
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Why does repeatmasker annotate transposons of length 1?
I am working on Mac OSX. I have downloaded RepeatMasker from www.repeatmasker.org. I have downloaded RepBase from www.girinst.org. I have download the WS266 version of the C. elegans genome from ...
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"perl: warning: Setting locale failed." in RepeatMasker
I'm trying to run Repeatmasker in Linux on the command line with:
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find repetitive elements on genome
I'm analyzing mygenome.fa with RepeatScout and RepeatMasker to find transposable elements. I produced a library of Repetitive elements with repeatscout and the I masked TE using Repeatmasker.
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Calculate the percentage of the genome that is represented by some sequences
I have construct a repeat libraries using de-novo identification methods. All results from different tools has been combined into one fasta file.
How can I get the percentage of how much these ...
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repeatscout freq table
I'm running Repeatscout. I built the l-mer table called myfile.freq of myfile.fa
Can anyone tell me what do they mean the second and third columns produced as output?
here I report an example:
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