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Questions tagged [reproducibility]

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3
votes
0answers
52 views

Details of ENCODE processing pipelines

I am trying to find details for how the ENCODE ChIP seq samples were processed. Linking to a ChIPseq samples on www.encodeproject.org (e.g. https://www.encodeproject.org/experiments/ENCSR051DXE/) ...
5
votes
2answers
122 views

Lisp in bioinformatics

After many years of programming in Python, C/C++ and other mainstream languages, I am looking for a new language of pleasure, mainly as a part of mental hygiene. Since I really admire the ideas behind ...
8
votes
4answers
686 views

Ultimate reproducibility in R?

I'm looking for a convenient and reliable way to make an R analysis reproducible, either at different times or across collaborators. Listing the package versions or a ...
23
votes
7answers
559 views

How to version the code and the data during the analysis?

I am currently looking for a system which will allow me to version both the code and the data in my research. I think my way of analyzing data is not uncommon, and this will be useful for many people ...