Questions tagged [rna-alignment]
The rna-alignment tag has no usage guidance.
4 questions
7
votes
1
answer
105
views
How to interpret contig-alignment.psa produced by velvet
I'm using velvet to align given reads of RNA to given CDSs (i.e. coding areas and genes) of an organism, so I can generate gene-expression profiles. But after using ...
- 325
6
votes
3
answers
136
views
How can I compute gene expression for a set of RNA reads?
I'm trying to compute a gene expression profile for an organism. I have gene nucleotide sequences of the mentioned organism stored in a fasta file and a set of paired reads stored in two separate ...
- 325
5
votes
2
answers
2k
views
Error creating indices using STAR
I am trying to index wheat genome using STAR through following command
...
3
votes
1
answer
2k
views
Disk space error while aligning reads using STAR
Hi am trying to align RNA-seq reads using STAR through following commands,
...