Questions tagged [skbio]

The tag has no usage guidance.

Filter by
Sorted by
Tagged with
0
votes
0answers
16 views

skbio “ValueError: Tree must be rooted” when using tree generated from SILVA's ACT

I'm trying to compute unweighted unifrac distances between samples. To do that, I generated a tree using SILVA's Alignment, Classification and Tree Service. I read the tree in using: ...
4
votes
4answers
2k views

How to create Phylogenetic Trees from fasta files in Python or R?

I have around a hundred Fasta files (and will collect several thousand) with DNA sequences and +50x coverage. What is a recommended method to construct a phylogenetic tree? Solutions in Python or R ...