As of May 31, 2023, we have updated our Code of Conduct.

Questions tagged [snv]

The tag has no usage guidance.

2 questions with no upvoted or accepted answers
Filter by
Sorted by
Tagged with
2 votes
0 answers

state-of-the-art methods to obtain SNVs from circulating tumor DNA?

What is the state-of-the-art to obtain SNVs from circulating tumor DNA after Illumina sequencing? This is, finding a list of nucleotide locations that show tumour SNVs filtered out of any germline ...
719016's user avatar
  • 2,274
1 vote
1 answer

Is it common to get different number of SNVs+Indels across samples from vcf files generated using GATK and DRAGEN (counts are higher for GATK)?

We have 2 vcf (Whole Exome Sequencing (WES) data; germline samples) files (e.g., vcf_1 and vcf_2). vcf_1 was generated (Ref. genome: hg38) using the GATK pipeline for 250 children and their parents ...
Apurba Shil's user avatar