Questions tagged [sra]
The sra tag has no usage guidance.
4 questions with no upvoted or accepted answers
How to determine NCBI's SRS google cloud bucket or AWS bucket
It appears that AWS and GCP host SRA data and it's beneficial to grab the data from that source when running on GCP for example. Given an SRR accession like SRR1929796 https://trace.ncbi.nlm.nih.gov/...
Problem with nextflow -resume and path.fromSRA
I have a problem with nextflow -resume Here is my script : ...
How to use SRA Toolkit to blast SRA accessions?
I'm trying to look for a gene in a group of SRA files. Web BLAST can't cope with them, so I assume they're too large. I've tried tblastn_vdb from the SRA toolkit, as follows. It had previously worked ...
How to access specific SRA sequences within an SRP file?
How do you get a specific 100 SRA sequences from a Bioproject which contains 400 runs, when you don't need all of them?