Questions tagged [stringdb]

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StringApp cytoscape [closed]

Hello everybody Hope you are doing well. I want to use stingApp in Cytoscape to visualize the rna seq data. I have a question about it. Is it possible to select the active interaction sources: ...
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How to find disease association of disgenet with string db in homo sapiens

I want to work string-db to read the protein-protein interaction from it and I look up disease association from disgenet but the Ids do not seem to match-up and I do not know what to do. for example ...
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Network analysis: confidence score (STRING database) validation

I am working on network analysis of differentially expressed genes, but the problem I am facing is that the gene set is very small (around 16 genes only), so when I'm trying to build an interaction ...
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STRINGdb: reverse map STRING identifiers to gene names?

Is there a functionality within STRINGdb package or in another environment to reverse map the STRING identifiers to Gene names? For example, the entire STRING network can be downloaded using the ...