Questions tagged [tabix]
The tabix tag has no usage guidance.
5
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tabix indexing a GTEx variant file- ':' delimited
I have a gtex variant file- the head of which looks as follows:
...
- 111
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1
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VCF-merge fails due to tabix not producing .tbi files
I'm trying to use vcf-merge to combine 2 exome capture vcf files (~250K and ~330K in size) before trying it on all 96 samples. I'd appreciate any advice on the best way to do that! I've detailed what ...
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How to obtain file offsets corresponding to range query in block-gzipped file
How can we retrieve the file offsets of the zipped-chunks in a block-gzipped file that contain records for a region/window of interest (e.g. Chr01:100-Chr02:145)?
It seems like the CLI of ...
- 319
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How to troubleshoot access to tabix file via http or https?
I have some BED files that I have compressed with bgzip and indexed with tabix.
I am using version ...
- 3,125
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Tabix queries spanning chromosomes
I can do something like this:
$ tabix ${url} ${range}
where ${range} spans a region on a single chromosome, e.g., ...
- 3,125