Questions tagged [telomere]

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Is there any way to align ChIP-seq reads to telomeres?

I know that telomeres are highly repeated sequences, but is there any way to retain any reads that map to these regions (on HG38)? I recently managed to find some protein binding to centromeres, ...
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How are centromeric/telomeric regions categorized in RepeatMasker? "Other" category?

I haven't been able to find the following in the documentation at http://www.repeatmasker.org/ (1) Why are certain regions classified as "Other"? Are these regions impossible to concretely classify ...