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Questions tagged [tensorflow]

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Warning message related to tensorflow package when trying to run deepbgc bioinformatics tool

I have come across some related issues pertaining to this tensorflow warning but none related specifically to deepbgc I have created a conda environment and have installed onto it the bioinformatics ...
Joe_G's user avatar
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1 vote
1 answer

tensorflow nn_model for DNA sequences: Matrix size-incompatible: In[0]: [2,1], In[1]: [784,300]

Hope anyone can help a beginner here. I'm building a proof-of concept tensorflow classifier for DNA sequences. However, the NN model does not let through train and test vectors saying the matrix size ...
monade's user avatar
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3 votes
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How to extract and visualize sequence logos from CNN kernels?

I created a basic CNN architecture using Tensorflow to classify transcription factor binding sites. My aim is to somehow extract and visualize sequence logos from the convolutional kernels. The model ...
Károly Pákozdi's user avatar
1 vote
1 answer

Segment cell organelles with pixellib

I've got some images of cell organelles and I really want to avoid labeling them by hand. The images all look something like the image below. Is there already an existing model specifially for cells? ...
Cowboy_Patrick's user avatar
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What datasets are available out there for prediction based on DNA sequences? [closed]

I am looking for publicly available data for a genomics deep learning project. My goal is to compare different architectures to predict biological insights from DNA sequences. I have heard about ...
0x90's user avatar
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