Questions tagged [thermodynamics]

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1answer
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Alignment for predicting DNA hybridization?

I am currently working on a Computer Science project where we are trying to build a large set of orthogonal single-stranded DNA sequences. The goal would be to ensure that when put in solution, the ...
2
votes
0answers
68 views

How is that ensemble Free energy is lower than the MFE in RNAfold from ViennaRNA

In the tutorial of RNAfold it states, RNAfold reads RNA sequences from stdin, calculates their minimum free energy (MFE) structure, prints the MFE structure in ...
3
votes
1answer
41 views

Folded Protein Chunk Dimensional Classification?

Are there known dimensional measurements for the classification of folded proteins given a starting chunk/domain as defined by something like the clustering functionality of MSM Builder? Examples of ...
2
votes
1answer
67 views

Is there a software or web server to calculate thermodynamic parameter enthalpy change of cellulase?

I want to calculate thermodynamic paremeter enthalpy change of cellulase, but I don't know what software can do this work. Please tell me, thank you very much !