Questions tagged [transcriptome-regulation]

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What's the meaning of Txn factor?

The transcription factor track in UCSC is named as Txn factor. Why Txn == Transcription?
4
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0answers
34 views

Find covariation of different DNA-binding protein binding between two conditions

I have ChIP-seq data of RNAPII and two other factors which we think follow RNAPII during transcription in two different conditions, and I'd like to show that the genes that lose RNAPII also lose the ...
3
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1answer
48 views

How to read gene regulatory network edge list files?

The following is an excerpt from an edge list file from the Gene Regulatory Database, YeastNet v3 ...
-1
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1answer
88 views

Can you tell me where these RNAi’s cleave on the Drosophila melanogaster CG2316 mRNA?

How can I work out at which sites on the Drosophila melanogaster CG2316 mRNA the RNAi`s: 12170/FBti0089992, 12168/FBtp0030589, 107343/FBtp0042163 and 41984/FBst0034349 (stock numbers/flybase ID)...