Questions tagged [trinity]
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3
questions
1
vote
2answers
43 views
Remove variable sequence component within a tree text file
I have a gene tree file of 436 orthologue genes from 6 species. I want to remove unwanted extensions as it looks massy after visualization. My file looks like:
(TRINITY_Clupea_DN5452_c0_g1_i1.p1:0....
0
votes
1answer
40 views
Trinity Multi-species compatibility
I am using Trinity from last couple-up months or so. Initially, using same species in different condition was worked fine for me. Now i am trying to do a DE analysis using multiple species. Actually, ...
1
vote
1answer
39 views
Assembling all transcripts for an individual gene? (using single sequence to seed the assembly)
Let's say I have a candidate gene and I believe that in an individual sample, the genome sequence differs from the reference which then interferes with alignment.
Is there a way for me to do a "...
