Questions tagged [trnascan-se]

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convert tRNA coordinates Result to Fasta format

I believe many of the experts here have gone through this issue, I have run tRNAscan-SE on my genome to predict all the tRNAs, and have successfully gotten all the tRNA coordinates like start, end ...
2
votes
0answers
49 views

What is tRNAscan-SE bit score?

I have used the command-line version of tRNAscan-SE by Lowe et al. (1997) on the reference genome sequence of C. elegans to predict tRNAs. The programme outputs a table with tRNA locations, amino acid,...
5
votes
4answers
1k views

tRNAscan-SE error: FATAL: Unable to find /usr/local/bin/cmsearch executable

I have downloaded tRNAscan-SE from here. After decompressing and untaring the file, I installed it using: ./configure make make install When I type ...