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3 votes
1 answer

Process gets killed before completing

I have a large tsv file (~15 GB) that is a kmer count matrix and I am trying to calculate jaccard distance of the counts but every time I try to run the following code the process ends before it's ...
rimo's user avatar
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1 vote
2 answers

How to run a GATK Docker Image with local files?

I'm trying to use the HaplotypeCaller from the GATK toolkit but I keep getting an error. I pulled GATK through Docker and am using this command: ...
rimo's user avatar
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