Questions tagged [tx2gene]
The tx2gene tag has no usage guidance.
2 questions
3
votes
1
answer
120
views
tximport txidcol and geneidcol selecting wrong column
I'm trying to run a differential expression analysis of 2 samples of the same species, but with different treatments using DESeq2. I'm using Ensembldb to create a tx2gene dataframe for tximport, ...
- 33
0
votes
2
answers
2k
views
tx2gene file for tximport issue
I am trying to use tximport to get raw count matrices of a bulk RNA-seq sequencing experiment. I followed the tutorial:
https://bioconductor.org/packages/3.7/bioc/...
- 2,578