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Questions tagged [upsetr]

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2 votes
1 answer
105 views

How to visualize unique and overlapping genes in upSet R plot

I am still a newbie in the field of bioinformatics. I have been attempting to visualize unique and common genes across six different tissues using the UpSetR plot ...
S'bonelo Glen Khumalo's user avatar
3 votes
0 answers
521 views

Expending UpsetR plot with Orthofinder families and gene numbers

I can create an Upset plot with the input file, which can be found here ...
user3523406's user avatar
0 votes
1 answer
221 views

Manually order the set fails in UpsetR

This question was also asked on Biostars I have tried to use UpsetR to visualise the input file, which can be found here. How is it possible to make UpsetR accept an order defined in ...
user3523406's user avatar
3 votes
1 answer
247 views

How to make bar bigger in UpsetR plot

I have tried to use UpsetR to visualize the input file which can be found here. ...
user3523406's user avatar
0 votes
1 answer
489 views

replacement has 1 row, data has 0

I have tried to use UpsetR to visualize the input file which can be found here ...
user3523406's user avatar
1 vote
3 answers
7k views

Preparing data for UpSet Plot in R

As i have multiple comparison so I m trying this UpSet plot, but it needs data to be formatted in particular way, one of the ways is as a list, so now the issue is ...
kcm's user avatar
  • 1,804
1 vote
2 answers
4k views

How can I use UpSet plot for expression/RNA-seq data

I have a data.frame of 27 000 x 17 and I want to feed it into UpSetR program, but getting ...
Nikita Vlasenko's user avatar