Questions tagged [upsetr]

The tag has no usage guidance.

Filter by
Sorted by
Tagged with
2 votes
1 answer
73 views

How to visualize unique and overlapping genes in upSet R plot

I am still a newbie in the field of bioinformatics. I have been attempting to visualize unique and common genes across six different tissues using the UpSetR plot ...
3 votes
0 answers
403 views

Expending UpsetR plot with Orthofinder families and gene numbers

I can create an Upset plot with the input file, which can be found here ...
0 votes
1 answer
175 views

Manually order the set fails in UpsetR

This question was also asked on Biostars I have tried to use UpsetR to visualise the input file, which can be found here. How is it possible to make UpsetR accept an order defined in ...
3 votes
1 answer
206 views

How to make bar bigger in UpsetR plot

I have tried to use UpsetR to visualize the input file which can be found here. ...
0 votes
1 answer
357 views

replacement has 1 row, data has 0

I have tried to use UpsetR to visualize the input file which can be found here ...
1 vote
2 answers
4k views

How can I use UpSet plot for expression/RNA-seq data

I have a data.frame of 27 000 x 17 and I want to feed it into UpSetR program, but getting ...
1 vote
3 answers
7k views

Preparing data for UpSet Plot in R

As i have multiple comparison so I m trying this UpSet plot, but it needs data to be formatted in particular way, one of the ways is as a list, so now the issue is ...