Questions tagged [validation]
The validation tag has no usage guidance.
6
questions
2
votes
1
answer
396
views
Where can I visualize Ramachandran plot?
I am using Rampage webserver to obtain a Ramachandran plot. However, the server does not reveal any plot just values (favored, allowed, outlier regions).
Can you recommend other similar web sites?
- 23
2
votes
2
answers
103
views
Difference between clinical significance and statistical significance
I am working on a clinical data analysis project and am from IT domain.
While I am analyzing the data, I came to know that though some of the variables are not statistically significant, they are ...
- 207
2
votes
1
answer
51
views
Metagenomic shotgun data with internal control
For 24 human stool samples I have metagenomic shotgun reads from an Illumina platform. The reads were filtered and mapped against a bacterial species library and specific maps to species were kept and ...
- 21
6
votes
1
answer
299
views
How to validate that BAMs have been downloaded correctly?
I currently have several hundred BAM files which were downloaded by someone else. These have remained untouched---before working with them, I would like to double-check that these BAMs have been fully ...
- 1,373
0
votes
2
answers
850
views
Is there a standard method to validate whether a bigWig file is correct?
I have a bigWig file of extension *.bw (which is standard), but I am suspicious that this file may be of an incorrect format.
Is there a standard method in the ...
- 1,651
6
votes
1
answer
158
views
Verify a predicted protein in one genome in a different genome of the same species
I have two genome assemblies of the same non-model species, call them Assembly 1 (generated from Illumina data) and Assembly 2 (generated from PacBio data).
For Assembly 1, I also have predicted ...
- 2,656