Questions tagged [vep]

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3 votes
2 answers

dealing with a list of VEP files

I'm new to dealing with big and compressed data so, I have some questions regarding that I have 1000 files, each file has the extension (vep.txt.gz) I want to read these files, then filter them. The ...
  • 31
5 votes
2 answers

Error installing VEP on mac

I have tried multiple different ways to get Ensemble's Variant Effect Predictor (VEP) to properly install on my mac, but I keep getting same error. ...
  • 51
2 votes
0 answers

In VEP annotation, how is the codon field interpreted?

After annotating with VEP a VCF file, we obtain different fields. One of them is called Codons which represents the affected codon in the transcript of the gene. ...
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