I am trying to use FDist2 (method to detect Fst outlier) via [Arlequin][1] (short explanation of this method in the manual at page 161 under `Detection of loci under selection from F-statistics`).

I've got descent knowledge in computer science (incl. bash scripting) but I fail to understand how Arlequin works. Could you please help me with a very simple reproducible example on how to use FDist2 via Arlequin via the command line?

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As the .zip documents comes with its pre-compiled version, I'll just note that I'm on Mac OS X but of course, a reproducible example with Linux would likely be equally helpful.


  [1]: http://cmpg.unibe.ch/software/arlequin35/Arl35Downloads.html