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Results tagged with nextflow
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user 14191
1
vote
1
answer
456
views
how to handle variable output from nextflow
I have this output which is going to do bwa next which is from join operator
[DF122_SO11378_A03, DF122_SO11378, DF122_SO11378_A03.norm.merged.fq, DF122_SO11378_A03.final.gfa, DF122_SO11378_A03.final.f …
- 137
4
votes
2
answers
268
views
Why does this nextflow script finish after running one sample?
I am using nextflow version 2.
bam_chl = Channel
.fromPath("bam_files/*.md.bam")
.map{ item -> tuple(item.baseName.substring(0, 18), item) }
ref_chl = Channel
.fromPath("sequences …
- 137
2
votes
1
answer
212
views
file order after nextflow groupTuple
Below is the code from nextflow site (https://www.nextflow.io/docs/edge/operator.html#grouptuple).
For the output, the first is A B C, and the second is C, A. …
- 137