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Results tagged with reads
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user 15257
Reads are the sequences output by a sequencing machine after the raw signal (e.g. light, electricity) is converted into bases by a basecaller.
2
votes
Extracting all reads from bam file which match read IDs in another file
samtools can do this natively too using -N, --qname-file CLI option:
samtools view -N read_names.txt in.bam > read_locs.sam
❯ samtools --version
samtools 1.16.1
Using htslib 1.16
- 193