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Results tagged with cnv
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user 17244
Copy Number Variation. Questions about how to define, find, annotate, study CNVs. Algorithms.
-1
votes
1
answer
75
views
GATK g CNV code Aborts Before Running Main Code
I have been struggling to get the code I wrote for running GATK g CNV on my Linux machine (Steps Here: https://gatk.broadinstitute.org/hc/en-us/articles/360035531152 ) to work. … Mandatory Step)"
# Step 7: Run PostprocessGermlineCNVCalls (Mandatory Step)
singularity exec $singularity_image PostprocessGermlineCNVCalls \
--model-shard-path "${shard_file}" \
--cnv-call-path …
- 380
2
votes
1
answer
106
views
CNV Kit ` from . import commands ImportError: cannot import name 'commands' from '__main__'`
Attempt 2
Perhaps I need to chmod +x * everything in the CNV kit directory and that will help. It did not change the error.
Why is this error occurring? How do I solve this issue? …
- 380