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The 3-D structure of a protein in space. It can refer to secondary structures, such as alpha helices or beta sheets, or the 3-D coordinates of the atoms making up a protein.
2
votes
1
answer
1k
views
What are the differences between "Site" and "CONECT" in a PDB file
The CONECT section in a PDB file describes atomic connectivity.
The SITE section describes (among other characteristics), environments surrounding ligands present in the structure.
Now, how come not …
4
votes
2
answers
183
views
Cross-reference with PDB database
I have a list of several thousand proteins and their UNIPROT IDs. I'm looking for an efficient method of cross-referencing it against the PDB tertiary structure database, and get a list of those prote …
1
vote
0
answers
15
views
"No records to view" error in the "Drug and Drug Target Mapping" PDB's search engine
I'm using the "Drug and Drug Target Mapping" search engine (http://www.rcsb.org/pdb/ligand/drugMapping.do).
I've noticed that there are some drugs (generic names) that if they appear in the query, the …