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Results tagged with genbank
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user 351
NCBI sequence annotation flat file.
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How to extract the protein fasta file from a genbank file?
Let's say I have a genbank file, e.g. the one downloaded from here, that contains entries as
gene 190..255
/gene="thrL"
/locus_tag="b0001" … ") :
print "Dealing with GenBank record %s" % seq_record.id
for seq_feature in seq_record.features :
if seq_feature.type=="CDS" :
assert len(seq_feature.qualifiers['translation …
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