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Results tagged with protein-structure
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user 3760
The 3-D structure of a protein in space. It can refer to secondary structures, such as alpha helices or beta sheets, or the 3-D coordinates of the atoms making up a protein.
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Possible evaluation or validation of predicted 3D protein structure generated by SCWRL4
I mutated a wild type protein structure using Scwrl4. How can I evaluate or validate the reliability of the predicted structure generated by Scwrl4?
- 199
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answers
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How to find Wild Type (WT) protein structure on Protein Data Bank (PDB)?
Currently, I am working on Galactose oxidase enzyme for protein docking and I am totally new to it. I have to study how mutation on specific residue will make mutated galactose oxidase better than the …
- 199
6
votes
3
answers
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Why is it necessary to add hydrogen and delete water before protein-ligand docking?
What is the reason for adding hydrogen and removing unnecessary water molecules from the protein structure before protein-ligand docking? FYI, the tools I used for docking is GOLD.
- 199
1
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1
answer
95
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Post docking evaluation
What to do after protein-ligand docking? Is there any necessary or enhancement step recommended after docking to validate the confirmation of highest score is the best? For your information, I am usin …
- 199