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user 3766
Please supplement your question with a minimal reproducible example. Use dput() for data and specify all non-base packages with library calls. For statistical questions please use http://stats.stackexchange.com.
1
vote
2
answers
372
views
How to fit all genes (labels) in chromosome ideogram plot made by RCircos package?
I am using Rcircos to make a chromosome ideogram plot for my gene list (n = 45). However, I am getting this error:
Not all labels will be plotted.
Type RCircos.Get.Gene.Name.Plot.Parameters()
to se …
- 351
0
votes
How to fit all genes (labels) in chromosome ideogram plot made by RCircos package?
Just want to add that apart from params$char.width, we can also use
params$text.size
params$text.size <- 0.2 #default 0.4
params$base.per.unit < 50000 #imp #default value = 30000
- 351
0
votes
1
answer
249
views
Error in formation of correlation matrix-(corrupt matrix -- dims not not match length)
mdat_human_test.txt", header = TRUE, row.names=1)
# gene-to-gene correlation
C <- cor (t(E))
write.table(C, "human_correlation_genes_mdat.txt", quote=FALSE, sep="\t",
row.names=TRUE)
# correlation rank matrix
R … <- t(apply(1-C, 1, rank))
write.table(R, "human_rank_genes_mdat.txt", quote=FALSE, sep="\t",
row.names=TRUE)
# mutual rank matrix
M <- sqrt(R * t(R))
write.table(M, "human_mutual_rank_genes_mdat.txt" …
- 351