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The set of all transcripts of a biological entity, e.g. the transcriptome of a single cell, of a tissue, of an organ, of an individual, of a species. Can also be used to refer to a subset of the transcriptome, e.g. the polyadenylated transcriptome, given that often experiments ignore the 99% of transcripts that are ribosomal RNAs.

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scRNA-seq differential transcript usage

There is a paper that takes advantage of transcript compatibility counts (TCCs). A TCC describes all of the potential transcripts that a cDNA alignment can be derived from. The senior author, Lior Pa …
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