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5
votes
if you have a repeating workflow, I strongly recommend to have a look at workflow management systems like snakemake. I've also wrote a little tutorial on biostars about this topic, which might be usef …
answered Dec 11 '18 by finswimmer
10
votes
Another solution for repeating one command with different parameters is to use parallel. Create a tab-delimited file samples.txt, which contains the sample names and the information for your read gro …
answered Dec 11 '18 by finswimmer
1
vote
What you can try is stated out in the message: If this fails, try re-running with --NO_HTSLIB
answered Feb 4 by finswimmer