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Reads are the sequences output by a sequencing machine after the raw signal (e.g. light, electricity) is converted into bases by a basecaller.

2
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I used this command for extracting read counts for almost 60 samples using featureCounts. featureCounts -a /gencode.v27.primary_assembly.annotation_nochr.gtf -F GTF -p -s 2 -T 8 -o counts.txt sample. …
asked May 7 '18 by beginner
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I have a gene expression data (read counts) table with many samples. Showing some of them below: Ensembl_ID A B C D E F G ENSG00000236601.2 0 0 0 1 0 0 1 ENSG000002 …
asked Apr 24 '18 by beginner