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These questions are about sequence alignment.

1
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the Shannon entropy (uncertainty) in a column. If you create a gapped FASTA alignment for each of your pairs, and concatenate it in to a multifasta, the script should still work with it. Though it may …
answered Oct 30 '17 by Joe Healey
0
votes
you can see, they all have E values of 0.0, but they differ quite a lot in score, this is because of the length of the alignment, and the different percentage IDs. …
answered Jun 21 '17 by Joe Healey