Devon will probably add a more precise answer, until then I just link his Tweet from last week:
Rollout started yesterday, should take a week to complete:
I started the roll-out on the 30th in the evening. There's not much of a delay for the October Bioconductor release, but for the summer release we first have to build the newest R version and then rebuild all conda CRAN packages. It's probably not widely known, but Bioconductor packages are only compatible with a single R version. For example, the ones being ...
I created a file .condarc in my home directory with the following content:
and it works now. I don't understand why this is necessary though. I thought the channels in the .condarc file would be used if I did not specify them in my command.
The error I see is,
UnicodeDecodeError: 'charmap' codec can't decode byte 0x90 in position
2440: character maps to
This suggests there is an error in the input format that the program doesn't like.
The thing that bothers me is why you have a mix of / and \ for directory paths. Windows uses \ and Linux and OS X use / . I don't Windows so I really can't ...
Short answer: respect the case of the tool name
Longer story below
Thanks to terdon, I printed the PATH when the conda environment was active and listed what was in the folder where conda installed the UCSC tool.
c_rehash libpng-config mysql_config openssl pngfix