3

Devon will probably add a more precise answer, until then I just link his Tweet from last week: https://twitter.com/dpryan79/status/1394714988720308226 Edit: 31.5.21 Rollout started yesterday, should take a week to complete: https://twitter.com/dpryan79/status/1399273322601459712


2

I started the roll-out on the 30th in the evening. There's not much of a delay for the October Bioconductor release, but for the summer release we first have to build the newest R version and then rebuild all conda CRAN packages. It's probably not widely known, but Bioconductor packages are only compatible with a single R version. For example, the ones being ...


2

I created a file .condarc in my home directory with the following content: channels: - conda-forge - bioconda - defaults and it works now. I don't understand why this is necessary though. I thought the channels in the .condarc file would be used if I did not specify them in my command.


1

The error I see is, UnicodeDecodeError: 'charmap' codec can't decode byte 0x90 in position 2440: character maps to This suggests there is an error in the input format that the program doesn't like. The thing that bothers me is why you have a mix of / and \ for directory paths. Windows uses \ and Linux and OS X use / . I don't Windows so I really can't ...


1

Short answer: respect the case of the tool name Longer story below Thanks to terdon, I printed the PATH when the conda environment was active and listed what was in the folder where conda installed the UCSC tool. ls /mnt/home2/miska/cr517/anaconda3/envs/ucsc-netchainsubset377/bin c_rehash libpng-config mysql_config openssl pngfix libpng16-...


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