New answers tagged bam
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You may be interested in a Python library I developed called PyReference
# Install
python3 -m pip install pyreference
# Process GTF into a JSON file
pyreference_gff_to_json.py --gtf gencode.hg38.gtf
# Create a setup file (see website for details)
# Run against your BAM file
pyreference_biotype.py ${BAM_FILE}
This generates a graph:
As well as a CSV of read ...
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