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Pipeline for paired end RNA sequence data to proteins

This is a much more complicated question than it might seem. First, you need to understand how RNA-Seq works, and what your data really is. Your "paired-end files" contain reads, which will ...
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1 vote

Biopython reads my tree eternally long

The reason is the RAM has been exceeded for Biopython's capabilities and you are encountering a 'RAM-bottleneck'. I've listed the options from 1 or 3 and recommend option 3c. The options are use: ...
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different results of RMSD for the same trajectory file

It's a reference issue. The second term. Your first block makes a list of numpy arrays which are the RMSD against frame 0 of each of the stacks, while in your second you make a concatenation of ...
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