2
votes
Error while running computeMatrix command in Deeptools
It worked, I installed a the newer version of deeptools, from GitHub:
https://github.com/deeptools/deepTools
Community wiki
2
votes
What is the required input peak file format for IDR (Irreproducible Discovery Rate)
As mentioned in the IDR readme on usage, there are examples in the IDR github repository here. Here's one of them:
...
1
vote
Accepted
How do you extract the full list of files in a GEO archive?
Unlikely that you will be able to get the original submission spreadsheet, but you can use Geofetch
1
vote
I am trying to find correlation between two ChIP-seq datasets but the Pearson and Spearman test results do not correspond with the peak overlap
Correlations like this between ChIP-seq datasets is common.
If you're calculating the correlation between BAM files across the entire genome, those are largely going to be the same (hence the need for ...
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