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Bacterial genomes and snpeff warnings 'WARNING_TRANSCRIPT_NO_START_CODON'

According to your report, you are using human HG18 as the reference genome version. Therefore, the report will be wrong along with the wrong codons warnings. It is unfruitful to try with a human ...
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Bacterial genomes and snpeff warnings 'WARNING_TRANSCRIPT_NO_START_CODON'

Bacteria have a different translation table from eukaryote nuclear DNA; it may be that SnpEff is expecting human genes in the genome. Have you followed the build steps outlined in the documentation? ...
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