New answers tagged codon
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Find a genomic coordinates for a protein aminoacid position
You can do this manually by looking up the protein variant on https://varsome.com. For your example, that would mean searching for KRAS G12V (change ...
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Bacterial genomes and snpeff warnings 'WARNING_TRANSCRIPT_NO_START_CODON'
According to your report, you are using human HG18 as the reference genome version. Therefore, the report will be wrong along with the wrong codons warnings. It is unfruitful to try with a human ...
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Accepted
Bacterial genomes and snpeff warnings 'WARNING_TRANSCRIPT_NO_START_CODON'
Bacteria have a different translation table from eukaryote nuclear DNA; it may be that SnpEff is expecting human genes in the genome. Have you followed the build steps outlined in the documentation?
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