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3 votes
Accepted

Coexpression network analysis

igraph is a serious general network theory framework for any given data science application. It permits full directionality and describes vertices (nodes), edges (...
M__'s user avatar
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1 vote
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Are there any databases for gene co-expression or expression pattern clustering?

How about: http://www.informatics.jax.org/expression.shtml http://www.emouseatlas.org/emage/home.php Other potential databases of interest: https://biokeanos.com/search?q=co-expression+%2Bmouse
ellimilial's user avatar
1 vote

Which module to select for Pathway analysis based on Module trait correlation and pvalue?

If you can run pathway analysis programmatically on all modules, yes, do it on all modules. Otherwise, select the modules with strongest associations with each subtype, both positive and negative. I ...
Peter Langfelder's user avatar

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